Determination of the nucleotide sequences in mouse U14 small nuclear RNA and 18S ribosomal RNA responsible for in vitro intermolecular base-pairing
نویسندگان
چکیده
منابع مشابه
Base pairing constraints drive structural epistasis in ribosomal RNA sequences.
It has long been accepted that the structural constraints stemming from the 3D structure of ribosomal RNA (rRNA) lead to coevolution through compensating mutations between interacting sites. State-of-the-art methods for detecting coevolving sites, however, while reaching high levels of specificity and sensitivity for Watson-Crick (WC) pairs of the helices defining the secondary structure, only ...
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Species of the order Mysida (Crustacea, Peracarida) are shrimp-like animals that occur in vast numbers in coastal regions of the world. The order Mysida comprises 1,053 species and 165 genera. The present study covers 25 species of the well-defined Mysidae, the most speciose family within the order Mysida. 18S rRNA sequence analysis confirms that the subfamily Siriellinae is monophyletic. On th...
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The database on small ribosomal subunit RNA (further abbreviated as SSU rRNA) structure has more than doubled in size in one year's time and currently contains 927 aligned sequences. Table 1 only lists the 475 sequences (references 1 —475) that were added to the database since publication of the last compilation (476). The latter should be consulted for data and references concerning the sequen...
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A row of small white volumes marches along one bookshelf in my cluttered office. It is flanked on both ends by slightly larger volumes. The first is labeled “Processing of RNA, Brookhaven Symposia in Biology, Number 26,” the proceedings of a meeting I attended in May, 1974, as a relatively new assistant professor with my undergraduate student David Ginsburg. The other larger volume is “RNA ’96,...
متن کاملLocal RNA base pairing probabilities in large sequences
SUMMARY The genome-wide search for non-coding RNAs requires efficient methods to compute and compare local secondary structures. Since the exact boundaries of such putative transcripts are typically unknown, arbitrary sequence windows have to be used in practice. Here we present a method for robustly computing the probabilities of local base pairs from long RNA sequences independent of the exac...
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ژورنال
عنوان ژورنال: European Journal of Biochemistry
سال: 1992
ISSN: 0014-2956
DOI: 10.1111/j.1432-1033.1992.tb16939.x